Basic Information
Locus ID:
BniB01g051840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52857764 | 52859856 | + | BniB01g051840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 35,217.70 Da | 40.12 | 75.49 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 34 | 119 | 4.99535E-41 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 230 | 293 | 9.06709E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 233 | 297 | 1.0E-10 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 36 | 119 | 1.2E-14 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 228 | 300 | 4.58E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 27 | 125 | 8.89E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 210 | 310 | 1.1E-16 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 17 | 140 | 6.3E-26 | IPR036431 |
| SMART | SM00501 | bright_3 | 33 | 124 | 2.5E-25 | IPR001606 |
| SMART | SM00398 | hmgende2 | 229 | 298 | 2.1E-10 | IPR009071 |
| SMART | SM01014 | ARID_2 | 29 | 119 | 1.5E-26 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 230 | 297 | 12.494254 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 32 | 123 | 25.181965 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_018488441.1 | PREDICTED: high mobility group B protein 10-like isoform X2 [Raphanus sativus] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SFV2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology