Basic Information
Locus ID:
BniB01g051640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52774722 | 52776457 | + | BniB01g051640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 53,984.73 Da | 37.92 | 85.56 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 28 | 347 | 8.6E-79 | IPR000490 |
| Pfam | PF07983 | X8 domain | 367 | 437 | 5.8E-20 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 28 | 348 | 6.27E-82 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 361 | 459 | 2.7E-9 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 27 | 353 | 7.4E-115 | - |
| SMART | SM00768 | X8_cls | 366 | 451 | 4.4E-45 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 262 | 275 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_018493223.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Raphanus sativus] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V9X0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025454 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology