Basic Information
Locus ID:
BniB01g051250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52564712 | 52566112 | + | BniB01g051250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 46,675.89 Da | 39.63 | 91.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 252 | 382 | 2.13752E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 43 | 241 | 4.07573E-136 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 225 | 6.6E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 1.1E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | 3.36E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 412 | 1.4E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 247 | 1.5E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 4.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 58 | 255 | 2.8E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | 29.000326 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 39 | 67 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | 25.735935 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_018440890.1 | PREDICTED: eukaryotic initiation factor 4A-1-like [Raphanus sativus] | 0 |
| P41376 | Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana OX=3702 GN=EIF4A1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B042 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020967 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology