Basic Information
Locus ID:
BniB01g051090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52465277 | 52468248 | - | BniB01g051090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 45,900.87 Da | 42.91 | 69.83 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 3.82484E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 8.23126E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 1.81694E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 4.7E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 320 | 2.6E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 216 | 1.71E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 249 | 343 | 3.39E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 217 | 4.1E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 338 | 2.8E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 2.5E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 2.5E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 2.2E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.5E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.658149 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 18.461504 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.32331 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_006407127.1 | oligouridylate-binding protein 1C [Eutrema salsugineum] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | V4LDR4 | Oligouridylate-binding protein 1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020804mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology