Basic Information
Locus ID:
BniB01g050760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52243153 | 52247008 | + | BniB01g050760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 77,758.81 Da | 41.26 | 87.32 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 69 | 7.9E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 117 | 166 | 3.1E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 423 | 692 | 9.7E-40 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 231 | 2.38E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 401 | 693 | 7.89E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 249 | 2.4E-44 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 708 | 3.3E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 385 | 498 | 1.3E-24 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 695 | 35.594372 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 142 | 164 | 7.00349 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 427 | 450 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 285 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.1 | STRUBBELIG-receptor family 7. | 0 |
| RefSeq | XP_013586900.1 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 7 [Brassica oleracea var. oleracea] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SEF9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025392 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology