Basic Information
Locus ID:
BniB01g049890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc-finger of the MIZ type in Nse subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 51749114 | 51750779 | + | BniB01g049890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 27,665.89 Da | 41.26 | 76.75 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16651 | SPL-RING_NSE2 | 158 | 225 | 3.40199E-24 | IPR004181 |
| Pfam | PF11789 | Zinc-finger of the MIZ type in Nse subunit | 144 | 204 | 4.2E-13 | IPR004181 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 230 | 9.42E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 240 | 2.9E-19 | IPR013083 |
| Coils | Coil | Coil | 41 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15150.1 | RING/U-box superfamily protein. Encodes a SUMO E3 ligase that regulates endocycle onset and meristem maintenance. | 0 |
| RefSeq | XP_009146282.2 | E3 SUMO-protein ligase MMS21 [Brassica rapa] | 0 |
| Q8GYH7 | E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana OX=3702 GN=MMS21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0P5C6 | E3 SUMO-protein ligase MMS21-like OS=Raphanus sativus OX=3726 GN=LOC108862586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19487 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7483 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007963 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19245, Sbi_jg37658 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5499 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006805 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23250, Sgl28320, Sgl28408 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030090, gene:ENSEOMG00000040490 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0019050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30161790 |
| Apiaceae | Apium graveolens | 1 | Ag2G01727 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G006230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713161 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2961.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23756 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021394m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g049890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1007 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1125, Cgl01G1180 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g04020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1551 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031294 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15531 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1403, BH01.5230, BH05.1572, CH05.1773 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363240, gene-QOZ80_5BG0411330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0087790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015524 |
| Poaceae | Oryza coarctata | 1 | Oco09G016790 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G234800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204422, Pt_Chr0505772, Pt_Chr0506053 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G001320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G649500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG058360, gene_TRIDC1BG067250 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G396600.1, TraesCS1B02G424800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb295840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24858 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28801 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.938, evm.TU.LG23.83 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.177 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11151, nbisL1-mrna-11158 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10611 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.112 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9134 |
| Salicaceae | Populus euphratica | 1 | populus_peu17344 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618655 |
| Solanaceae | Solanum chilense | 1 | SOLCI002318300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024476 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7715 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0167 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02160.v3.1 |