Basic Information
Locus ID:
BniB01g049680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 51653118 | 51656431 | + | BniB01g049680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 89,022.25 Da | 59.78 | 77.00 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 488 | 791 | 2.84538E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 512 | 0.091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 690 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 568 | 606 | 8.6E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 482 | 793 | 9.92E-54 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 40 | 260 | 5.71E-21 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 262 | 6.1E-26 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 459 | 796 | 3.0E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 754 | 793 | 36.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 14 | 252 | 0.0015 | IPR000719 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 6.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 690 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 513 | 0.3 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 252 | 11.467634 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 692 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 659 | 692 | 10.284687 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 610 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 615 | 13.014815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 677 | 691 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 550 | 564 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 349 | - | - |
| Coils | Coil | Coil | 127 | 147 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_006406987.1 | protein SPA1-RELATED 3 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VEG6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029557 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology