Basic Information
Locus ID:
BniB01g049490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 51599839 | 51602988 | + | BniB01g049490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 95,282.94 Da | 51.94 | 63.14 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 565 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 523 | 4.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 423 | 2.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 386 | 704 | 5.65E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 377 | 743 | 5.8E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 565 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 658 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 424 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 606 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 523 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 659 | 700 | 0.086 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 392 | 425 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 532 | 566 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 492 | 526 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 532 | 566 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 532 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 392 | 433 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 677 | 709 | 8.937796 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 552 | 566 | 3.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 411 | 425 | 3.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 510 | 524 | 3.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 375 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013697133.1 | WD repeat-containing protein 44-like [Brassica napus] | 0 |
| Q03177 | WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YMR102C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VEM7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029579 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology