Basic Information
Locus ID:
BniB01g048060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Brix
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 50780453 | 50783044 | + | BniB01g048060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 47,176.76 Da | 44.37 | 73.05 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 198 | 334 | 1.3E-28 | IPR006527 |
| Pfam | PF00646 | F-box domain | 17 | 54 | 3.8E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 155 | 1.11E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 54 | 6.4E-10 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 4.8E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 200 | 329 | 2.6E-25 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 58 | 12.093921 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 155 | - | - |
| Coils | Coil | Coil | 144 | 164 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32430.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009146074.3 | putative F-box protein At1g47390 [Brassica rapa] | 0 |
| Q9LQL4 | Putative F-box/kelch-repeat protein At1g32430 OS=Arabidopsis thaliana OX=3702 GN=At1g32430 PE=4 SV=2 | 0 | |
| TrEMBL | A0A8X7SH94 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |