Basic Information
Locus ID:
BniB01g048050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Weak chloroplast movement under blue light
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 50775070 | 50776091 | + | BniB01g048050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 31,398.59 Da | 34.38 | 76.52 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 49 | 4.7E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 192 | 267 | 2.6E-15 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 59 | 6.28E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 51 | 5.5E-9 | - |
| SMART | SM00256 | fbox_2 | 15 | 55 | 3.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 65 | 185 | 1.3E-11 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 192 | 266 | 6.0E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 10.133335 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32430.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009146074.3 | putative F-box protein At1g47390 [Brassica rapa] | 0 |
| Q9LQL4 | Putative F-box/kelch-repeat protein At1g32430 OS=Arabidopsis thaliana OX=3702 GN=At1g32430 PE=4 SV=2 | 0 | |
| TrEMBL | M4E072 | F-box domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |