Basic Information
Locus ID:
BniB01g047880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 50656263 | 50661690 | - | BniB01g047880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 126,148.55 Da | 43.22 | 78.27 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 951 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 351 | 448 | 2.67E-8 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 417 | 1047 | 1.01E-49 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 976 | 1100 | 7.94E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 545 | 3.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 753 | 970 | 1.9E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 971 | 1114 | 5.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 550 | 691 | 7.3E-10 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.4E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 493 | 534 | 0.0097 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1044 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 580 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 867 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 445 | 7.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 951 | 9.230148 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 632 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.330713 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 961 | 11.477578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 478 | 492 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1143 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_018492321.1 | PREDICTED: topless-related protein 2-like [Raphanus sativus] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7V9L2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025779 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology