Basic Information
Locus ID:
BniB01g047200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphopantothenoylcysteine decarboxylase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 50334796 | 50336007 | - | BniB01g047200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 47,862.67 Da | 43.78 | 84.81 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 46 | 8.4E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 233 | 395 | 1.9E-41 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 98 | 1.96E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 45 | 2.9E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 1.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 176 | 364 | 3.3E-35 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 50 | 11.19311 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17310.1 | F-box and associated interaction domains-containing protein. Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance | 0 |
| RefSeq | XP_048635084.1 | protein SUPPRESSOR OF NIM1 1-like [Brassica napus] | 0 |
| Q8LL17 | Protein SUPPRESSOR OF NIM1 1 OS=Arabidopsis thaliana OX=3702 GN=SON1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VA25 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025829 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |