Basic Information
Locus ID:
BniB01g047180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 50327752 | 50328939 | - | BniB01g047180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 42,876.40 Da | 38.46 | 96.00 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 63 | 6.7E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 174 | 1.0E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 365 | 5.21E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 183 | 364 | 6.6E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 182 | 3.2E-36 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 206 | 228 | 7.303818 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17640.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_013638413.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A0D3CJ85 | LRRNT_2 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106343679 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology