Basic Information
Locus ID:
BniB01g046240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 49787631 | 49793133 | - | BniB01g046240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 139,925.06 Da | 47.84 | 74.88 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 304 | 433 | 5.05927E-20 | - |
| CDD | cd12108 | Hr-like | 44 | 170 | 5.31219E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1121 | 1163 | 1.11879E-17 | - |
| CDD | cd12108 | Hr-like | 654 | 811 | 3.00635E-25 | - |
| Pfam | PF14599 | Zinc-ribbon | 1169 | 1226 | 2.5E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 301 | 435 | 1.2E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 172 | 1.9E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 650 | 812 | 1.9E-5 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1121 | 1163 | 1.6E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 993 | 1068 | 4.5E-16 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 985 | 1049 | 6.8E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1059 | 1115 | 1.31E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1120 | 1167 | 1.52E-8 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1193 | 1235 | 1.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 646 | 876 | 8.0E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1115 | 1165 | 5.2E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 302 | 451 | 4.0E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 40 | 190 | 1.1E-25 | - |
| SMART | SM00184 | ring_2 | 1122 | 1163 | 9.4E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 986 | 1055 | 24.970894 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1122 | 1163 | 11.309038 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1058 | 1121 | 29.410564 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_013749402.2 | zinc finger protein BRUTUS isoform X2 [Brassica napus] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6EMQ5 | Zinc finger protein BRUTUS OS=Brassica oleracea OX=3712 GN=BOLC5T33474H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology