Basic Information
Locus ID:
BniB01g043880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 48398952 | 48403503 | - | BniB01g043880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 114,437.32 Da | 52.25 | 77.70 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 830 | 985 | 4.21169E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 243 | 633 | 2.21852E-77 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 748 | 793 | 1.6E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 261 | 711 | 4.6E-70 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 881 | 976 | 9.8E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 633 | 9.8E-48 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 642 | 1032 | 8.8E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 745 | 790 | 1.9E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 403 | 491 | 4.8E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 648 | 1033 | 3.3E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 734 | 799 | 4.6E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 521 | 634 | 1.0E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 215 | 397 | 1.8E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 239 | 610 | 2.5E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 893 | 976 | 9.6E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 749 | 787 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 866 | 1029 | 13.387023 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 421 | 595 | 12.980032 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 749 | 788 | 11.500827 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 764 | 773 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 526 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20010.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_013721346.1 | helicase-like transcription factor CHR27 isoform X1 [Brassica napus] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SHD2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology