Basic Information
Locus ID:
BniB01g043470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK9
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 48119799 | 48120689 | - | BniB01g043470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 19,337.37 Da | 32.57 | 80.69 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 103 | 162 | 1.17576E-12 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 42 | 88 | 6.7E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 99 | 162 | 7.5E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 26 | 162 | 7.71E-35 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 11 | 165 | 2.1E-38 | - |
| SMART | SM00054 | efh_1 | 33 | 56 | 91.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 100 | 128 | 1.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 64 | 92 | 1.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 135 | 164 | 0.97 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 60 | 95 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 147 | 167 | 8.209045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 96 | 131 | 12.532831 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 109 | 121 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 73 | 85 | - | IPR018247 |
| Coils | Coil | Coil | 46 | 66 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20410.1 | calmodulin-domain protein kinase 9. calmodulin-domain protein kinase CDPK isoform 9 (CPK9) | 0 |
| RefSeq | XP_010466227.1 | PREDICTED: calcium-dependent protein kinase 9-like [Camelina sativa] | 0 |
| Q38868 | Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana OX=3702 GN=CPK9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9M3Z5 | Calcium-dependent protein kinase OS=Brassica cretica OX=69181 GN=F2Q70_00010213 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |