Basic Information
Locus ID:
BniB01g043270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 47971448 | 47978254 | - | BniB01g043270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 130,654.07 Da | 32.52 | 89.69 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 422 | 727 | 1.35093E-146 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 132 | 418 | 3.93114E-158 | - |
| CDD | cd14066 | STKc_IRAK | 864 | 1134 | 1.48842E-91 | - |
| Pfam | PF03647 | Transmembrane proteins 14C | 5 | 103 | 8.9E-28 | IPR005349 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 429 | 723 | 3.2E-22 | IPR030395 |
| Pfam | PF00069 | Protein kinase domain | 860 | 1073 | 7.3E-46 | IPR000719 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 167 | 390 | 2.4E-5 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 422 | 728 | 4.45E-37 | IPR017946 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 842 | 1131 | 1.5E-82 | IPR011009 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 131 | 417 | 1.54E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 131 | 418 | 7.3E-34 | IPR017946 |
| Gene3D | G3DSA:1.10.10.1740 | - | 1 | 110 | 5.0E-30 | IPR044890 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 935 | 1160 | 3.9E-59 | - |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 422 | 728 | 3.5E-42 | IPR017946 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 842 | 934 | 1.9E-32 | - |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 422 | 728 | 31.950222 | IPR030395 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 858 | 1136 | 37.417656 | IPR000719 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 132 | 419 | 26.582836 | IPR030395 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 864 | 888 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 982 | 994 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1163 | 1177 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20520.1 | SHV3-like 3. | 0 |
| RefSeq | XP_013652606.1 | glycerophosphodiester phosphodiesterase GDPDL5 [Brassica napus] | 0 |
| F4JEQ1 | Glycerophosphodiester phosphodiesterase GDPDL5 OS=Arabidopsis thaliana OX=3702 GN=GDPDL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816THY9 | glycerophosphodiester phosphodiesterase (Fragment) OS=Brassica napus OX=3708 GN=DARMORV10_A05P28330.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology