Basic Information
Locus ID:
BniB01g042830.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 47637509 | 47639838 | - | BniB01g042830.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 49,773.89 Da | 49.15 | 80.14 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08215 | STKc_Nek | 14 | 268 | 7.04229E-133 | - |
| Pfam | PF00069 | Protein kinase domain | 15 | 267 | 2.2E-67 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 298 | 1.75E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 93 | 6.4E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 96 | 362 | 4.9E-61 | - |
| SMART | SM00220 | serkin_6 | 15 | 268 | 8.0E-85 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 15 | 268 | 46.703697 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 135 | 147 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 21 | 45 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 316 | - | - |
| Coils | Coil | Coil | 320 | 340 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20860.1 | NIMA-related kinase 5. Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | 0 |
| RefSeq | XP_013587460.1 | PREDICTED: serine/threonine-protein kinase Nek6 [Brassica oleracea var. oleracea] | 0 |
| Q9LT35 | Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana OX=3702 GN=NEK6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A078G2R7 | BnaA05g20040D protein OS=Brassica napus OX=3708 GN=BnaA05g20040D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology