HalophFGD

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Basic Information
Locus ID: BniB01g042610.2N
Species & Taxonomic ID: Brassica nigra & 3710
Genome Assembly: N100
Description: F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
Chromosome Start End Strand ID
B1 47517202 47518332 - BniB01g042610.2N
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.40 42,605.20 Da 40.99 88.80 -0.26
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07734 F-box associated 198 356 3.5E-34 IPR006527
Pfam PF00646 F-box domain 8 46 2.8E-9 IPR001810
SUPERFAMILY SSF50965 Galactose oxidase, central domain 95 317 7.19E-7 IPR011043
SUPERFAMILY SSF81383 F-box domain 6 123 7.72E-12 IPR036047
Gene3D G3DSA:1.20.1280.50 - 2 48 6.4E-6 -
SMART SM00256 fbox_2 8 48 1.6E-7 IPR001810
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 97 326 5.0E-39 IPR017451
ProSiteProfiles PS50181 F-box domain profile. 2 49 10.34529 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G10190.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_022558677.1 putative F-box protein At4g10190 [Brassica napus] 0
Swiss-Prot O82622 Putative F-box protein At4g10190 OS=Arabidopsis thaliana OX=3702 GN=At4g10190 PE=4 SV=2 0
TrEMBL A0A8X7SFX6 Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026176 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Arecaceae Cocos nucifera 1 COCNU_01G005860
Brassicaceae Arabidopsis thaliana 81 AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ...
AT1G65990.1, AT2G04920.1, AT2G07140.1, AT2G11200.1, AT2G17830.1, AT2G18780.1, AT2G24510.1, AT2G27520.1, AT2G38590.1, AT3G03405.1, AT3G04250.1, AT3G16020.1, AT3G16740.1, AT3G16820.1, AT3G16880.1, AT3G17265.1, AT3G17270.1, AT3G17280.1, AT3G17320.1, AT3G17400.1, AT3G17480.1, AT3G17490.1, AT3G17500.1, AT3G17530.1, AT3G17540.1, AT3G17560.1, AT3G17570.1, AT3G17620.1, AT3G18120.1, AT3G18320.1, AT3G18330.1, AT3G18910.1, AT3G18980.1, AT3G19410.1, AT3G19470.1, AT3G19560.1, AT3G20690.1, AT3G20700.1, AT3G20710.1, AT3G21120.1, AT3G21130.1, AT3G21170.1, AT3G22350.1, AT3G22421.1, AT3G22700.1, AT3G22710.1, AT3G22720.1, AT3G22730.1, AT3G22770.1, AT3G22870.1, AT3G22940.1, AT3G23260.1, AT3G23420.1, AT3G23633.1, AT3G23680.1, AT3G23685.1, AT3G24580.1, AT3G24700.1, AT3G25090.1, AT3G25460.1, AT3G44120.1, AT3G49980.1, AT4G09870.1, AT4G10190.1, AT4G10740.1, AT4G33290.1, AT5G36190.1, AT5G36200.1, AT5G36730.1, AT5G36820.1, AT5G41490.1, AT5G41500.1, AT5G41510.1, AT5G42460.1, AT5G47300.1, AT5G51000.1, AT5G62830.1
Brassicaceae Eutrema salsugineum 96 Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ...
Thhalv10000599m.g.v1.0, Thhalv10000604m.g.v1.0, Thhalv10001129m.g.v1.0, Thhalv10001171m.g.v1.0, Thhalv10001844m.g.v1.0, Thhalv10002009m.g.v1.0, Thhalv10002791m.g.v1.0, Thhalv10002795m.g.v1.0, Thhalv10002817m.g.v1.0, Thhalv10002867m.g.v1.0, Thhalv10002868m.g.v1.0, Thhalv10002911m.g.v1.0, Thhalv10002915m.g.v1.0, Thhalv10002939m.g.v1.0, Thhalv10002957m.g.v1.0, Thhalv10002977m.g.v1.0, Thhalv10002981m.g.v1.0, Thhalv10002985m.g.v1.0, Thhalv10002999m.g.v1.0, Thhalv10003000m.g.v1.0, Thhalv10003040m.g.v1.0, Thhalv10003050m.g.v1.0, Thhalv10003090m.g.v1.0, Thhalv10003102m.g.v1.0, Thhalv10003403m.g.v1.0, Thhalv10005679m.g.v1.0, Thhalv10006371m.g.v1.0, Thhalv10007777m.g.v1.0, Thhalv10009814m.g.v1.0, Thhalv10012007m.g.v1.0, Thhalv10012157m.g.v1.0, Thhalv10015377m.g.v1.0, Thhalv10015387m.g.v1.0, Thhalv10015418m.g.v1.0, Thhalv10015430m.g.v1.0, Thhalv10015464m.g.v1.0, Thhalv10015770m.g.v1.0, Thhalv10015830m.g.v1.0, Thhalv10015889m.g.v1.0, Thhalv10017529m.g.v1.0, Thhalv10017637m.g.v1.0, Thhalv10020932m.g.v1.0, Thhalv10020934m.g.v1.0, Thhalv10020988m.g.v1.0, Thhalv10021906m.g.v1.0, Thhalv10021918m.g.v1.0, Thhalv10021925m.g.v1.0, Thhalv10021928m.g.v1.0, Thhalv10021950m.g.v1.0, Thhalv10021953m.g.v1.0, Thhalv10021978m.g.v1.0, Thhalv10021981m.g.v1.0, Thhalv10022006m.g.v1.0, Thhalv10022064m.g.v1.0, Thhalv10022067m.g.v1.0, Thhalv10022074m.g.v1.0, Thhalv10022075m.g.v1.0, Thhalv10022089m.g.v1.0, Thhalv10022091m.g.v1.0, Thhalv10022121m.g.v1.0, Thhalv10022140m.g.v1.0, Thhalv10022141m.g.v1.0, Thhalv10022145m.g.v1.0, Thhalv10022148m.g.v1.0, Thhalv10022163m.g.v1.0, Thhalv10022189m.g.v1.0, Thhalv10022250m.g.v1.0, Thhalv10022266m.g.v1.0, Thhalv10022270m.g.v1.0, Thhalv10022281m.g.v1.0, Thhalv10022288m.g.v1.0, Thhalv10022315m.g.v1.0, Thhalv10022361m.g.v1.0, Thhalv10022364m.g.v1.0, Thhalv10022368m.g.v1.0, Thhalv10022377m.g.v1.0, Thhalv10022393m.g.v1.0, Thhalv10022401m.g.v1.0, Thhalv10022418m.g.v1.0, Thhalv10022425m.g.v1.0, Thhalv10022798m.g.v1.0, Thhalv10023157m.g.v1.0, Thhalv10026768m.g.v1.0, Thhalv10026986m.g.v1.0, Thhalv10027003m.g.v1.0, Thhalv10027013m.g.v1.0, Thhalv10027248m.g.v1.0, Thhalv10027355m.g.v1.0, Thhalv10027376m.g.v1.0, Thhalv10027471m.g.v1.0, Thhalv10027516m.g.v1.0, Thhalv10027561m.g.v1.0, Thhalv10028127m.g.v1.0, Thhalv10029509m.g.v1.0
Brassicaceae Schrenkiella parvula 15 Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ...
Sp3g15660.v2.2, Sp3g15690.v2.2, Sp3g17310.v2.2, Sp3g18730.v2.2, Sp3g19130.v2.2, Sp3g21250.v2.2, Sp3g22340.v2.2, Sp4g04370.v2.2, Sp4g16570.v2.2, Sp4g17180.v2.2, Sp7g11920.v2.2, Sp7g29450.v2.2
Brassicaceae Brassica nigra 83 BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ...
BniB01g042490.2N, BniB01g042510.2N, BniB01g042540.2N, BniB01g042580.2N, BniB01g042590.2N, BniB01g042610.2N, BniB01g043040.2N, BniB01g043050.2N, BniB01g043060.2N, BniB01g043110.2N, BniB01g044140.2N, BniB01g044150.2N, BniB01g045040.2N, BniB01g047300.2N, BniB01g047310.2N, BniB01g047900.2N, BniB01g049140.2N, BniB01g049150.2N, BniB02g010180.2N, BniB02g010740.2N, BniB02g047620.2N, BniB02g064000.2N, BniB03g024790.2N, BniB03g025020.2N, BniB03g039860.2N, BniB03g049230.2N, BniB03g049760.2N, BniB03g068000.2N, BniB04g038530.2N, BniB04g038580.2N, BniB04g038590.2N, BniB04g038600.2N, BniB04g038610.2N, BniB04g038620.2N, BniB04g043970.2N, BniB04g056000.2N, BniB04g056010.2N, BniB05g004620.2N, BniB05g007210.2N, BniB05g007230.2N, BniB05g017560.2N, BniB05g019400.2N, BniB05g019430.2N, BniB05g025140.2N, BniB05g038570.2N, BniB06g008450.2N, BniB06g026860.2N, BniB06g027320.2N, BniB06g027400.2N, BniB06g027440.2N, BniB06g028000.2N, BniB06g048280.2N, BniB07g002470.2N, BniB07g002490.2N, BniB07g002510.2N, BniB07g023750.2N, BniB07g024380.2N, BniB07g024430.2N, BniB07g029280.2N, BniB07g029470.2N, BniB07g029780.2N, BniB07g030600.2N, BniB07g031750.2N, BniB07g048390.2N, BniB07g048640.2N, BniB07g048810.2N, BniB07g050430.2N, BniB07g051260.2N, BniB07g052390.2N, BniB07g052550.2N, BniB07g052760.2N, BniB07g052960.2N, BniB07g053790.2N, BniB07g057530.2N, BniB07g057550.2N, BniB08g006680.2N, BniB08g006690.2N, BniB08g019980.2N, BniB08g038820.2N, BniS06172g150.2N
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.