Basic Information
Locus ID:
BniB01g042070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 47109028 | 47112839 | - | BniB01g042070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 56,908.38 Da | 50.79 | 71.62 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 0.064 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 35 | 505 | 9.16E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 192 | 6.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 337 | 6.1E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 338 | 508 | 9.0E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 27 | 62 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 511 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 140 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 424 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 366 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 309 | 11.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 6 | 512 | 2.0E-193 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 228 | 242 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 100 | 114 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 41 | 61 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 258 | 285 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 397 | 423 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 87 | 115 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 230 | 257 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 343 | 370 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 371 | 396 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 286 | 314 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 315 | 342 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 481 | 510 | 6.3E-158 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 116 | 144 | 6.3E-158 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 179 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51690.1 | protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA, | 0 |
| RefSeq | XP_018485905.1 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like isoform X2 [Raphanus sativus] | 0 |
| Q38821 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7V8X2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology