Basic Information
Locus ID:
BniB01g041060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 46311947 | 46312737 | + | BniB01g041060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 26,889.87 Da | 45.79 | 104.75 | 0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 52 | 81 | 3.2E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 109 | 1.27E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 142 | 3.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 52 | 106 | 0.0022 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 52 | 107 | 10.497623 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 71 | 80 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 42 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013649359.2 | uncharacterized protein LOC106354060 [Brassica napus] | 0 |
| TrEMBL | A0A8X7PWV3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology