Basic Information
Locus ID:
BniB01g040790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 45883959 | 45884711 | + | BniB01g040790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 27,366.72 Da | 53.26 | 80.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03752 | proteasome_alpha_type_4 | 3 | 215 | 1.6072E-162 | - |
| Pfam | PF10584 | Proteasome subunit A N-terminal signature | 5 | 27 | 1.7E-13 | IPR000426 |
| Pfam | PF00227 | Proteasome subunit | 30 | 214 | 4.4E-62 | IPR001353 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 4 | 233 | 3.66E-79 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 249 | 1.1E-91 | IPR029055 |
| SMART | SM00948 | Proteasome_A_N_2 | 5 | 27 | 3.4E-11 | IPR000426 |
| ProSiteProfiles | PS51475 | Proteasome alpha-type subunit profile. | 20 | 237 | 92.752357 | IPR023332 |
| ProSitePatterns | PS00388 | Proteasome alpha-type subunits signature. | 5 | 27 | - | IPR000426 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22110.1 | 20S proteasome alpha subunit C1. Encodes the alpha-3 subunit of 20s proteasome. | 0 |
| RefSeq | XP_009145430.2 | proteasome subunit alpha type-4-A [Brassica rapa] | 0 |
| O81148 | Proteasome subunit alpha type-4-A OS=Arabidopsis thaliana OX=3702 GN=PAC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SGD8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026307 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20936, jg6509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19878 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g030070, BVRB_5g113140 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21582, Sbi_jg22239, Sbi_jg30818, Sbi_jg58449 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16166, Seu_jg28320 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008765 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54980, Sgl60239, Sgl62710, Sgl67330 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006351, gene:ENSEOMG00000020143 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0020940, CQ.Regalona.r1.2AG0022750 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30199180, pistato.v30249260, pistato.v30279580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01036, Ag7G01116 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G018330, COCNU_11G000680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710835 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.697.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G32308, Ftri3G17589 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G22110.1, AT4G15165.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021384m.g.v1.0, Thhalv10026071m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g19940.v2.2, Sp7g13390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g040790.2N, BniB06g058480.2N, BniB07g049500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0495 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0508 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0088s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36670, gene.Thate02g36690, gene.Thate08g15680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10231 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1592, evm.TU.LG01.2754 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033349, Pov_00038674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29027, Lb5G29029 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.382, BH06.510, CH06.505 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0509910, gene-QOZ80_6AG0510790 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656250.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028286, gene-QYE76_028396 |
| Poaceae | Oryza coarctata | 3 | Oco11G003210, Oco11G003520, Oco12G003170 |
| Poaceae | Oryza sativa | 3 | LOC_Os06g07140.1, LOC_Os06g07878.1, LOC_Os06g07978.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G057000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022040, Chr14G002450, Chr21G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G257400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015330, gene_TRIDC7BG004650 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G130500.1.cds1, TraesCS7B02G030800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb271660_P001, Zm00001eb375510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5087 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29172, Zma_g31420 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.833, evm.TU.LG02.834, evm.TU.LG05.485 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1035 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13461, nbisL1-mrna-16570 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5346 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4355 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000004l.102, add.evm.TU.utg000008l.325 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17579, nbisL1-mrna-18215 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7676, nbisL1-mrna-9637 |
| Salicaceae | Populus euphratica | 2 | populus_peu10550, populus_peu26456 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606818, gene-LOC132621645 |
| Solanaceae | Solanum chilense | 1 | SOLCI005623200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011444 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21721_chr08_-, STRG.32416_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07140.v3.1 |