Basic Information
Locus ID:
BniB01g039200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 44484150 | 44485996 | - | BniB01g039200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 26,043.62 Da | 39.05 | 70.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 26 | 228 | 3.1E-81 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 115 | 218 | 2.29E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 115 | 231 | 1.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 119 | 221 | 22.936304 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23050.1 | indole-3-acetic acid 7. Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. | 0 |
| RefSeq | XP_013749219.1 | auxin-responsive protein IAA7 [Brassica napus] | 0 |
| Q38825 | Auxin-responsive protein IAA7 OS=Arabidopsis thaliana OX=3702 GN=IAA7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SGM4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology