Basic Information
Locus ID:
BniB01g038340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 43506628 | 43509178 | + | BniB01g038340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 49,243.05 Da | 45.52 | 90.16 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 230 | 335 | 4.2E-24 | IPR013187 |
| Pfam | PF00646 | F-box domain | 33 | 66 | 1.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 75 | 2.09E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 65 | 3.8E-5 | - |
| SMART | SM00256 | fbox_2 | 28 | 69 | 7.1E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 337 | 1.5E-37 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.2 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010501225.1 | PREDICTED: F-box/LRR-repeat protein At2g40920-like [Camelina sativa] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7SHT9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026494 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |