Basic Information
Locus ID:
BniB01g037900.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 43099741 | 43102591 | - | BniB01g037900.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 99,190.06 Da | 41.43 | 88.15 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 571 | 846 | 4.18912E-92 | - |
| Pfam | PF13855 | Leucine rich repeat | 88 | 145 | 4.7E-11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 364 | 423 | 2.5E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 321 | 359 | 0.0061 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 569 | 841 | 4.5E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 60 | 3.3E-7 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 555 | 857 | 1.48E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 430 | 2.89E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 319 | 2.0E-67 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 645 | 870 | 4.4E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 446 | 8.9E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 527 | 644 | 3.4E-33 | - |
| SMART | SM00369 | LRR_typ_2 | 183 | 206 | 130.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 565 | 847 | 3.7E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 386 | 409 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 182 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 86 | 108 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 410 | 432 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 132 | 0.49 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 565 | 847 | 40.484737 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 571 | 593 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 692 | 704 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 918 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009102585.1 | receptor-like kinase TMK4 [Brassica rapa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SL52 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology