Basic Information
Locus ID:
BniB01g033480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Helicase domain-containing protein IBR domain-containing protein zinc finger protein-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 34009871 | 34010707 | + | BniB01g033480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 31,602.11 Da | 43.67 | 95.65 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 168 | 198 | 1.3E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 242 | 7.78E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 248 | 8.6E-11 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 164 | 278 | 16.758888 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 184 | 193 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10370.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_018475697.1 | PREDICTED: ATP-dependent RNA helicase DEAH12, chloroplastic-like [Raphanus sativus] | 0 |
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7SIQ3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026891 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003636, gene:ENSEOMG00000025916 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717971 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033480.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07910 |