Basic Information
Locus ID:
BniB01g031240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 21990544 | 21995520 | - | BniB01g031240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 130,295.22 Da | 42.52 | 71.39 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 856 | 915 | 1.64054E-4 | - |
| CDD | cd15539 | PHD1_AIRE | 667 | 706 | 1.36955E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 589 | 639 | 6.0E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 658 | 715 | 3.77E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 844 | 947 | 6.34E-8 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 829 | 946 | 2.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 658 | 767 | 4.1E-18 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 259 | 271 | 1.9 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 327 | 339 | 180.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 666 | 707 | 2.7E-7 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 183 | 195 | 4.5 | IPR017956 |
| SMART | SM00249 | PHD_3 | 708 | 763 | 2.1 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 797 | 957 | 10.064102 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 664 | 709 | 9.516701 | IPR019787 |
| PRINTS | PR00929 | AT-hook-like domain signature | 257 | 268 | 5.6E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 183 | 193 | 5.6E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 325 | 335 | 5.6E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1077 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 537 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_048610701.1 | uncharacterized protein LOC106346579 isoform X1 [Brassica napus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SKC0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027033 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology