Basic Information
Locus ID:
BniB01g030320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 20724190 | 20724801 | - | BniB01g030320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 23,011.77 Da | 53.27 | 91.18 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 147 | 191 | 6.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 193 | 8.84E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 195 | 4.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 190 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 191 | 12.40076 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013673404.1 | E3 ubiquitin-protein ligase RNF181 [Brassica napus] | 0 |
| Q5M974 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SHX2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027117 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT5G37200.1, AT5G37220.1, AT5G37230.1, AT5G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10028290m.g.v1.0, Thhalv10028317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g29000.v2.2, Sp6g06800.v2.2, Sp6g10420.v2.2 ... |
| Brassicaceae | Brassica nigra | 3 | BniB01g030310.2N, BniB01g030320.2N, BniB03g062660.2N |