halophFGD

Basic Information

Locus ID: BniB01g029840.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B1	20160214	20160956	-	BniB01g029840.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.81	23,446.82 Da	47.22	86.03	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	32	73	1.3E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	39	80	5.36E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	22	67	3.5E-5	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G28223.1	F-box family protein.	0
RefSeq	XP_013746678.2	F-box protein At3g28330-like [Brassica napus]	0
Swiss-Prot	Q9LHD8	Putative F-box protein At3g28280 OS=Arabidopsis thaliana OX=3702 GN=At3g28280 PE=4 SV=2	0
TrEMBL	A0A8X7QAP3	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_073192 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	10	AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... AT3G26010.1, AT3G28223.1, AT3G28280.1, AT3G28330.1, AT3G48220.1, AT4G22430.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... Thhalv10009395m.g.v1.0, Thhalv10009727m.g.v1.0, Thhalv10011517m.g.v1.0, Thhalv10013759m.g.v1.0, Thhalv10019528m.g.v1.0, Thhalv10022100m.g.v1.0, Thhalv10023522m.g.v1.0, Thhalv10023870m.g.v1.0, Thhalv10024137m.g.v1.0, Thhalv10027176m.g.v1.0, Thhalv10028185m.g.v1.0, Thhalv10029227m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... Sp5g25320.v2.2, SpUn0003_0080.v2.2, SpUn0137_0030.v2.2
Brassicaceae	Brassica nigra	20	BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... BniB02g040930.2N, BniB02g041990.2N, BniB02g042880.2N, BniB02g072790.2N, BniB02g080470.2N, BniB03g022200.2N, BniB04g006950.2N, BniB04g019910.2N, BniB04g057180.2N, BniB04g057190.2N, BniB04g060460.2N, BniB04g060490.2N, BniB04g060520.2N, BniB05g016030.2N, BniB05g026460.2N, BniB06g034010.2N, BniB06g034020.2N
Plantaginaceae	Plantago ovata	1	Pov_00032378