Basic Information
Locus ID:
BniB01g029350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 19077177 | 19078382 | - | BniB01g029350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 37,832.51 Da | 79.69 | 66.55 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 218 | 260 | 1.2E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 24 | 56 | 2.3E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 266 | 6.85E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 266 | 4.6E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 219 | 259 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 219 | 260 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013741768.2 | probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Brassica napus] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SJ25 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology