Basic Information
Locus ID:
BniB01g029150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 18878679 | 18881271 | - | BniB01g029150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 40,869.48 Da | 51.67 | 80.34 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 146 | 195 | 1.75826E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 2 | 74 | 8.58772E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 152 | 190 | 1.6E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.3E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 3.9E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 337 | 372 | 1.3E-11 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 89 | 5.76E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 379 | 8.75E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 200 | 4.6E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 253 | 318 | 7.85E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 145 | 196 | 1.4E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 329 | 376 | 1.2E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 246 | 313 | 5.0E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.6E-28 | - |
| SMART | SM00165 | uba_6 | 337 | 374 | 5.1E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 152 | 192 | 3.9E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 2 | 75 | 9.4E-22 | IPR000626 |
| SMART | SM00727 | CBM | 255 | 298 | 9.8E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 2 | 380 | 1.6E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 334 | 375 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 2 | 76 | 19.433754 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 150 | 193 | 12.546894 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 362 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 378 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 331 | 347 | 1.2E-34 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013631168.1 | PREDICTED: ubiquitin receptor RAD23d [Brassica oleracea var. oleracea] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VAF7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027224 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology