Basic Information
Locus ID:
BniB01g027720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ER membrane protein complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 17713229 | 17716896 | + | BniB01g027720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 52,314.86 Da | 42.43 | 83.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 326 | 392 | 4.2E-11 | IPR013187 |
| Pfam | PF08268 | F-box associated domain | 185 | 270 | 1.8E-15 | IPR013187 |
| Pfam | PF00646 | F-box domain | 3 | 36 | 2.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 45 | 1.57E-6 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 87 | 274 | 3.8E-35 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32420.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013633140.1 | PREDICTED: putative F-box protein At1g32420 [Brassica oleracea var. oleracea] | 0 |
| Q9LQL5 | Putative F-box protein At1g32420 OS=Arabidopsis thaliana OX=3702 GN=At1g32420 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0D3BZV3 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106338788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G52490.1, AT3G56670.1, AT5G50220.1, AT5G62060.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002240m.g.v1.0, Thhalv10005381m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g016620.2N, BniB01g016630.2N, BniB01g027720.2N ... |