Basic Information
Locus ID:
BniB01g026730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 16823804 | 16824895 | - | BniB01g026730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 41,108.44 Da | 64.70 | 78.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 4.25347E-19 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 6.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 181 | 1.97E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 180 | 3.5E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 307 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009139983.1 | RING-H2 finger protein ATL46 [Brassica rapa] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VAI8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology