Basic Information
Locus ID:
BniB01g026650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 16790337 | 16792115 | + | BniB01g026650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 68,064.68 Da | 46.41 | 68.56 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 101 | 150 | 1.2E-11 | IPR004146 |
| Pfam | PF03107 | C1 domain | 419 | 459 | 7.9E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 359 | 408 | 5.4E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 163 | 205 | 2.3E-12 | IPR004146 |
| Pfam | PF03107 | C1 domain | 298 | 349 | 1.9E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 49 | 92 | 6.5E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 215 | 262 | 6.5E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 127 | 218 | 7.18E-25 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 241 | 362 | 7.12E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 48 | 92 | 6.28E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 442 | 528 | 6.13E-17 | - |
| SMART | SM00109 | c1_12 | 216 | 267 | 0.5 | IPR002219 |
| SMART | SM00109 | c1_12 | 420 | 464 | 2.5 | IPR002219 |
| SMART | SM00109 | c1_12 | 164 | 212 | 3.7 | IPR002219 |
| SMART | SM00109 | c1_12 | 52 | 97 | 0.11 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 51 | 99 | 8.7568 | IPR002219 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40320.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_013633161.1 | PREDICTED: uncharacterized protein LOC106338816 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A3P6CHT2 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA04T16981Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |