Basic Information
Locus ID:
BniB01g026530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 16721357 | 16722115 | + | BniB01g026530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 20,128.44 Da | 22.21 | 83.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11715 | Nucleoporin Nup120/160 | 3 | 31 | 1.6E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 140 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 179 | 5.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 182 | 3.39E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 37 | 1.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 184 | 3.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 102 | 140 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 180 | 3.4E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 16 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 110 | 149 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 25 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 185 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 185 | 9.505904 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 127 | 141 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 127 | 141 | 4.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 3 | 17 | 4.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 4.2E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.2 | - | 0 |
| RefSeq | XP_048633424.1 | zinc finger CCCH domain-containing protein 59-like [Brassica napus] | 0 |
| Q9FKR9 | Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=ZFWD3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AL73 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology