Basic Information
Locus ID:
BniB01g024410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
KIP1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 15031745 | 15036763 | - | BniB01g024410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 188,684.70 Da | 50.39 | 76.81 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07765 | KIP1-like protein | 14 | 78 | 7.3E-10 | IPR011684 |
| SUPERFAMILY | SSF57997 | Tropomyosin | 500 | 716 | 1.37E-6 | - |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | 194 | 405 | 2.88E-5 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 455 | 624 | 2.0E-7 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 188 | 354 | 2.0E-9 | - |
| Gene3D | G3DSA:1.10.287.1490 | - | 951 | 1138 | 2.1E-7 | - |
| ProSiteProfiles | PS51774 | Networked (NET) actin-binding (NAB) domain profile. | 10 | 84 | 24.960697 | IPR011684 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 923 | 962 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1540 | 1592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1270 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 796 | - | - |
| Coils | Coil | Coil | 1360 | 1394 | - | - |
| Coils | Coil | Coil | 513 | 568 | - | - |
| Coils | Coil | Coil | 689 | 758 | - | - |
| Coils | Coil | Coil | 858 | 927 | - | - |
| Coils | Coil | Coil | 1325 | 1352 | - | - |
| Coils | Coil | Coil | 1037 | 1092 | - | - |
| Coils | Coil | Coil | 200 | 325 | - | - |
| Coils | Coil | Coil | 995 | 1029 | - | - |
| Coils | Coil | Coil | 337 | 406 | - | - |
| Coils | Coil | Coil | 1199 | 1303 | - | - |
| Coils | Coil | Coil | 158 | 185 | - | - |
| Coils | Coil | Coil | 1118 | 1152 | - | - |
| Coils | Coil | Coil | 425 | 501 | - | - |
| Coils | Coil | Coil | 1491 | 1609 | - | - |
| Coils | Coil | Coil | 594 | 670 | - | - |
| Coils | Coil | Coil | 777 | 839 | - | - |
| Coils | Coil | Coil | 946 | 987 | - | - |
| Coils | Coil | Coil | 1171 | 1191 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41790.1 | COP1-interactive protein 1. encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. | 0 |
| RefSeq | XP_013738161.2 | COP1-interactive protein 1 [Brassica napus] | 0 |
| F4JZY1 | COP1-interactive protein 1 OS=Arabidopsis thaliana OX=3702 GN=CIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VAW8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027671 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg23535, jg37040, jg4738, jg4739, jg7681 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1777 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004490 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099300, BVRB_5g099310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg23998, Sbi_jg23999, Sbi_jg7827, Sbi_jg7828 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12204, Seu_jg12205 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001088, GOSA_00001089 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl52162, Sgl52163, Sgl57432, Sgl57435 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004097, gene:ENSEOMG00000005494 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0006170, CQ.Regalona.r1.5AG0006180 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134800 |
| Apiaceae | Apium graveolens | 3 | Ag11G05075, Ag6G01681, Ag7G00643 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G22822, Ftri14G09583, Ftri2G05629, Ftri3G14520 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64320.1, AT1G64330.1, AT5G41780.1, AT5G41790.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10023387m.g.v1.0, Thhalv10024082m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00430.v2.2, Sp2g00440.v2.2, Sp7g00300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g024410.2N, BniB04g022750.2N, BniB04g022760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0194 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0220, Cgl03G0243 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17960 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2124, nbisL1-mrna-2125 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1507, evm.TU.LG10.1508 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00005338, Pov_00028436, Pov_00028437, Pov_00028438 ... |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G08262, Lb2G08265, Lb2G08266, Lb4G24244, Lb4G24245 |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.Contig36.2, evm.TU.Contig40.1, evm.TU.LG04.3291 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.125, evm.TU.Scaffold_14_RagTag.127 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18284, nbisL1-mrna-18285 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2884, nbisL1-mrna-2885, nbisL1-mrna-4387 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20379, nbisL1-mrna-8607, nbisL1-mrna-8608 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000007l.170, add.evm.TU.utg000022l.241 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014226, Maker00018400 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15983, nbisL1-mrna-23201, nbisL1-mrna-3572 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10971, nbisL1-mrna-10973, nbisL1-mrna-6742 |
| Salicaceae | Populus euphratica | 8 | populus_peu03658, populus_peu03660, populus_peu34507 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602431, gene-LOC132608775, gene-LOC132634814 |
| Solanaceae | Solanum chilense | 3 | SOLCI002865100, SOLCI004793100, SOLCI005177000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006870, gene-LOC107027410, gene-LOC107028391 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23355_chr05_-, STRG.23356_chr05_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4256, TC01G4257, TC02G0609 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06340.v3.1 |