Basic Information
Locus ID:
BniB01g024170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 14876481 | 14877797 | - | BniB01g024170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 48,706.13 Da | 34.48 | 95.66 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 38 | 79 | 1.07721E-24 | - |
| Pfam | PF04564 | U-box domain | 34 | 101 | 1.6E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 127 | 414 | 1.5E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 110 | 5.5E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 123 | 417 | 2.8E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 107 | 8.1E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 37 | 100 | 7.3E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 33 | 107 | 42.487663 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_018482612.1 | PREDICTED: U-box domain-containing protein 21 [Raphanus sativus] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AQL7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology