Basic Information
Locus ID:
BniB01g024150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 14841239 | 14843962 | + | BniB01g024150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 71,559.87 Da | 46.72 | 84.44 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 126 | 2.52832E-45 | - |
| Pfam | PF03000 | NPH3 family | 208 | 477 | 4.6E-88 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 115 | 1.5E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 116 | 4.71E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 120 | 6.8E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 123 | 0.0038 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 99 | 10.633594 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 208 | 501 | 85.89019 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 642 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_009140160.1 | BTB/POZ domain-containing protein At1g30440 [Brassica rapa] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A817ASM7 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A04P15270.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology