Basic Information
Locus ID:
BniB01g024100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 14820784 | 14821260 | + | BniB01g024100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 17,334.37 Da | 25.70 | 66.58 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 15 | 78 | 9.5E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 153 | 1.3E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 14 | 153 | 1.08E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 6 | 80 | 7.0E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 87 | 156 | 6.7E-25 | - |
| SMART | SM00054 | efh_1 | 92 | 120 | 6.2E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 16 | 44 | 5.1E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 4.6E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 52 | 80 | 0.0061 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 16.18713 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 158 | 12.142296 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 16.438189 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 12.811786 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 61 | 73 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 25 | 37 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37770.1 | EF hand calcium-binding protein family. Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels. | 0 |
| RefSeq | XP_013631660.1 | PREDICTED: calcium-binding protein CML24 [Brassica oleracea var. oleracea] | 0 |
| P25070 | Calcium-binding protein CML24 OS=Arabidopsis thaliana OX=3702 GN=CML24 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VAY6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027703 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology