Basic Information
Locus ID:
BniB01g022900.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 13821801 | 13823469 | - | BniB01g022900.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 35,678.94 Da | 57.51 | 67.84 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 12 | 183 | 6.2E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 3 | 106 | 5.3E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 108 | 181 | 4.8E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 268 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_013717070.1 | ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1 [Brassica napus] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | M4END7 | Ubiquitin fusion degradation protein 1 homolog OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology