Basic Information
Locus ID:
BniB01g022190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 13412643 | 13413758 | + | BniB01g022190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 40,873.56 Da | 51.63 | 85.90 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 164 | 207 | 1.8E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 24 | 64 | 1.6E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 116 | 158 | 3.1E-13 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 71 | 354 | 1.7E-49 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 84 | 339 | 2.6E-30 | IPR015915 |
| SMART | SM00612 | kelc_smart | 125 | 171 | 1.1E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 172 | 224 | 4.9 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21950.1 | SKP1 interacting partner 6. Encodes an SKP1 interacting partner (SKIP6). | 0 |
| RefSeq | XP_013671380.2 | F-box/kelch-repeat protein SKIP6-like [Brassica napus] | 0 |
| Q9SJ04 | F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana OX=3702 GN=SKIP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ALQ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027797 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39461 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026775 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12836, Sbi_jg53052 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8816 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33328, Sgl38493, Sgl39613 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000205, gene:ENSEOMG00000005629 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019390, CQ.Regalona.r1.6BG0020430 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30043630, pistato.v30043670 |
| Apiaceae | Apium graveolens | 3 | Ag3G01261, Ag5G00013, Ag7G02266 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G007410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700899 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G10037, FtriNA23893 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01030.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g022190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1880 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g10120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1976 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014431 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19785 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.4370, CH07.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0581510, gene-QOZ80_7BG0612580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113310.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038817 |
| Poaceae | Oryza coarctata | 1 | Oco14G016400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G387100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305545 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G000480, Chr27G017100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G240200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG013390, gene_TRIDC2BG016300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G111200.1.cds1, TraesCS2B02G130200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb111340_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5768 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.297 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1627 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12152 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.980 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4453 |
| Salicaceae | Populus euphratica | 1 | populus_peu23020 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614493 |
| Solanaceae | Solanum chilense | 1 | SOLCI001732700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017893 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_341 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1027 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29830.v3.1 |