Basic Information
Locus ID:
BniB01g020740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 12117846 | 12119745 | - | BniB01g020740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 54,372.67 Da | 34.55 | 89.29 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 205 | 424 | 3.9E-72 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 31 | 121 | 1.6E-4 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 25 | 120 | 2.67E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 124 | 1.4E-7 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 205 | 448 | 82.375526 | IPR027356 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23050.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_009140445.1 | BTB/POZ domain-containing protein NPY4 [Brassica rapa] | 0 |
| O64814 | Phototropic-responsive NPH3 family protein NPY4 OS=Arabidopsis thaliana OX=3702 GN=NPY4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8ALV1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027872 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology