Basic Information
Locus ID:
BniB01g019900.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
LYK4
Description:
Protein kinase family protein peptidoglycan-binding LysM domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 11431558 | 11433381 | + | BniB01g019900.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 66,522.86 Da | 39.77 | 89.57 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 184 | 218 | 0.0076274 | IPR018392 |
| Pfam | PF01476 | LysM domain | 186 | 230 | 8.9E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 119 | 164 | 2.1E-4 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 379 | 592 | 1.1E-36 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 337 | 598 | 6.09E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 334 | 606 | 9.3E-57 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 104 | 176 | 3.4E-5 | IPR036779 |
| SMART | SM00257 | LysM_2 | 118 | 164 | 1.1E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 185 | 230 | 0.0098 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 184 | 229 | 11.332658 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 117 | 163 | 10.120274 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 278 | 597 | 29.785297 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 457 | 469 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 259 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_009140493.1 | lysM domain receptor-like kinase 4 [Brassica rapa] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ALZ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027932 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology