Basic Information
Locus ID:
BniB01g019890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RNF185-like
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 11429531 | 11430235 | + | BniB01g019890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 25,647.54 Da | 41.20 | 61.28 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 25 | 69 | 3.37105E-31 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 26 | 67 | 7.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 80 | 4.21E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 94 | 5.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 7.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 13.448223 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018459003.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 [Raphanus sativus] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AM35 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology