Basic Information
Locus ID:
BniB01g019850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 11372017 | 11372899 | + | BniB01g019850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 12,668.32 Da | 42.30 | 95.13 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00348 | Polyprenyl synthetase | 59 | 118 | 1.1E-10 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 60 | 118 | 1.82E-13 | IPR008949 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 8 | 65 | 1.67E-8 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 60 | 1.3E-14 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 61 | 119 | 3.3E-14 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 83 | 95 | - | IPR033749 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23800.1 | geranylgeranyl pyrophosphate synthase 2. encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase | 0 |
| RefSeq | XP_013747002.3 | heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2-like [Brassica napus] | 0 |
| O04046 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GGPPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8S9QTI6 | GGPP synthase OS=Brassica cretica OX=69181 GN=F2Q69_00016573 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology