Basic Information
Locus ID:
BniB01g019540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 11205906 | 11208464 | + | BniB01g019540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 93,850.66 Da | 35.14 | 90.84 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 81 | 125 | 7.5E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 548 | 841 | 2.2E-33 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 186 | 245 | 8.7E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 521 | 843 | 9.83E-62 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 419 | 6.12E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 254 | 6.7E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 434 | 1.7E-19 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 620 | 852 | 1.0E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 255 | 322 | 1.7E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 176 | 2.1E-37 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 504 | 619 | 2.7E-29 | - |
| SMART | SM00369 | LRR_typ_2 | 326 | 350 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 112 | 136 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 184 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 207 | 340.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 544 | 843 | 6.0E-12 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 232 | 255 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 89 | 111 | 8.6E-4 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 544 | 852 | 34.195107 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 91 | 112 | 8.012282 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 92 | 105 | 2.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 350 | 363 | 2.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24230.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_018478092.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Raphanus sativus] | 0 |
| C0LGK9 | Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana OX=3702 GN=At2g24230 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0N039 | probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Raphanus sativus OX=3726 GN=LOC108849087 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15596, jg33076, jg3985 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265900 |
| Apiaceae | Apium graveolens | 3 | Ag2G00421, Ag2G02778, Ag3G01353 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014880, COCNU_11G005370, COCNU_11G005380 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696275, gene-LOC103707793 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3377.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G01498, Ftri4G02475 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24230.1, AT5G58150.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000045m.g.v1.0, Thhalv10012745m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g03170.v2.2, Sp6g19830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g019540.2N, BniB08g013380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2552 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2692 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08450, gene.Cymno06g07670 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.279 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000855 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625400, gene-QOZ80_8BG0653310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473960.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032235 |
| Poaceae | Oryza coarctata | 2 | Oco15G005480, Oco16G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g17410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G106600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr17G011450, Chr20G008760, Chr29G008460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030040, gene_TRIDC5BG031680 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G185000.1.cds1, TraesCS5B02G183000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49471 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23884 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g18690, gene.Posoc03g12950, gene.Posoc03g12960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.123, evm.TU.Scaffold_4_RagTag.2180 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13911, nbisL1-mrna-25304 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1878, nbisL1-mrna-21282 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16562, nbisL1-mrna-4930 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.470, add.evm.TU.utg000033l.24 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17483, nbisL1-mrna-23534 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14517, nbisL1-mrna-9213 |
| Salicaceae | Populus euphratica | 2 | populus_peu05591, populus_peu12232 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602970 |
| Solanaceae | Solanum chilense | 1 | SOLCI001360200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026117 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12367_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1060 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17630.v3.1 |