Basic Information
Locus ID:
BniB01g019130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 10860612 | 10861250 | - | BniB01g019130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 23,957.14 Da | 70.06 | 82.74 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 144 | 192 | 7.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 201 | 1.74E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 208 | 2.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 145 | 191 | 0.0013 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 192 | 11.899158 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G42940.1 | 0 | |
| RefSeq | XP_018479769.1 | PREDICTED: RING-H2 finger protein ATL67-like [Raphanus sativus] | 0 |
| Q9VE61 | E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VBE8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT2G24285.1, AT2G24460.1, AT2G24480.1, AT2G25565.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000562m.g.v1.0, Thhalv10003018m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g03480.v2.2, Sp4g04960.v2.2, SpUn0364_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g017830.2N, BniB01g019000.2N, BniB01g019130.2N ... |