Basic Information
Locus ID:
BniB01g019000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 10817687 | 10818331 | + | BniB01g019000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 24,149.18 Da | 63.96 | 81.96 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 146 | 190 | 7.6E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 199 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 208 | 6.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 192 | 10.453364 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28620.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_018481887.1 | PREDICTED: RING-H2 finger protein ATL67-like [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7VBI6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT2G24285.1, AT2G24460.1, AT2G24480.1, AT2G25565.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000562m.g.v1.0, Thhalv10003018m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g03480.v2.2, Sp4g04960.v2.2, SpUn0364_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g017830.2N, BniB01g019000.2N, BniB01g019130.2N ... |