Basic Information
Locus ID:
BniB01g018910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 10759252 | 10762538 | + | BniB01g018910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 70,502.38 Da | 50.61 | 70.39 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 164 | 470 | 1.39537E-162 | - |
| Pfam | PF01753 | MYND finger | 65 | 102 | 9.1E-11 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 165 | 469 | 2.5E-38 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 161 | 477 | 3.14E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 62 | 106 | 1.38E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 159 | 479 | 2.6E-87 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 53 | 108 | 4.1E-14 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 65 | 102 | 12.207615 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 165 | 472 | 47.985542 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 166 | 181 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 65 | 102 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 603 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_013636293.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Brassica oleracea var. oleracea] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VBL4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology