halophFGD

Basic Information

Locus ID: BniB01g018600.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B1	10509219	10524456	-	BniB01g018600.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.60	139,867.42 Da	49.58	91.29	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	334	396	8.4E-7	IPR005174
Pfam	PF00646	F-box domain	1142	1176	0.0068	IPR001810
Pfam	PF00646	F-box domain	57	92	0.0043	IPR001810
Pfam	PF00646	F-box domain	649	685	0.0018	IPR001810
Pfam	PF03478	Protein of unknown function (DUF295)	922	980	2.9E-5	IPR005174
SUPERFAMILY	SSF81383	F-box domain	47	93	7.59E-6	IPR036047
SMART	SM00256	fbox_2	653	693	5.0	IPR001810
SMART	SM00256	fbox_2	61	101	0.087	IPR001810
SMART	SM00256	fbox_2	1146	1188	0.53	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	10	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	599	620	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G64840.1	Protein of unknown function (DUF295).
RefSeq	XP_013688312.2	F-box/kelch-repeat protein At1g64840 isoform X1 [Brassica napus]
Swiss-Prot	Q9XIR1	F-box/kelch-repeat protein At1g64840 OS=Arabidopsis thaliana OX=3702 GN=At1g64840 PE=2 SV=2
TrEMBL	A0A8X7VBN0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028004 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14263, jg14264, jg850
Aizoaceae	Mesembryanthemum crystallinum	37	gene_13593, gene_13594, gene_13595, gene_13596, gene_13597 ... gene_13598, gene_13599, gene_13600, gene_13601, gene_13602, gene_13603, gene_13609, gene_14475, gene_19176, gene_19457, gene_19458, gene_20203, gene_20288, gene_20289, gene_21053, gene_21055, gene_24564, gene_24978, gene_24993, gene_24994, gene_24995, gene_24996, gene_24997, gene_24998, gene_26532, gene_26535, gene_26536, gene_26537, gene_26538, gene_26539, gene_26706, gene_8283
Amaranthaceae	Atriplex hortensis	42	Ah000434, Ah000435, Ah000437, Ah000439, Ah000440, Ah000441 ... Ah000443, Ah000444, Ah000445, Ah000446, Ah000447, Ah000449, Ah000450, Ah000453, Ah000454, Ah000455, Ah000456, Ah000457, Ah000458, Ah000460, Ah000462, Ah000463, Ah000464, Ah000466, Ah000468, Ah000469, Ah001050, Ah001062, Ah002559, Ah003395, Ah009603, Ah009605, Ah009606, Ah025377, Ah025627, Ah025628, Ah025972, Ah026930, Ah026931, Ah032663, Ah035018, Ah035039
Amaranthaceae	Beta vulgaris	20	BVRB_4g090440, BVRB_5g117880, BVRB_5g118330, BVRB_5g118340 ... BVRB_5g118600, BVRB_5g118640, BVRB_5g118650, BVRB_5g118690, BVRB_5g118700, BVRB_5g118710, BVRB_5g118720, BVRB_5g118730, BVRB_5g118740, BVRB_5g118750, BVRB_5g118770, BVRB_6g131460, BVRB_6g142490, BVRB_9g213290, BVRB_9g213300, BVRB_9g223910
Amaranthaceae	Salicornia bigelovii	34	Sbi_jg1115, Sbi_jg1116, Sbi_jg1117, Sbi_jg1118, Sbi_jg1119 ... Sbi_jg1120, Sbi_jg12298, Sbi_jg12299, Sbi_jg12300, Sbi_jg12849, Sbi_jg14218, Sbi_jg18038, Sbi_jg26754, Sbi_jg28432, Sbi_jg29776, Sbi_jg30673, Sbi_jg35462, Sbi_jg35463, Sbi_jg39535, Sbi_jg39573, Sbi_jg43293, Sbi_jg47282, Sbi_jg47285, Sbi_jg47288, Sbi_jg52273, Sbi_jg53026, Sbi_jg54764, Sbi_jg54793, Sbi_jg58599, Sbi_jg58600, Sbi_jg58601, Sbi_jg61387, Sbi_jg61388, Sbi_jg62667
Amaranthaceae	Salicornia europaea	17	Seu_jg10142, Seu_jg1266, Seu_jg139, Seu_jg141, Seu_jg14765 ... Seu_jg18596, Seu_jg21555, Seu_jg21557, Seu_jg21558, Seu_jg25012, Seu_jg28462, Seu_jg28463, Seu_jg3581, Seu_jg7074, Seu_jg8501, Seu_jg8835, Seu_jg9575
Amaranthaceae	Suaeda aralocaspica	26	GOSA_00001410, GOSA_00004350, GOSA_00005022, GOSA_00005527 ... GOSA_00012549, GOSA_00014831, GOSA_00014832, GOSA_00014833, GOSA_00014834, GOSA_00014835, GOSA_00014838, GOSA_00017594, GOSA_00017595, GOSA_00017596, GOSA_00017597, GOSA_00017598, GOSA_00017600, GOSA_00018836, GOSA_00018837, GOSA_00018838, GOSA_00022107, GOSA_00023332, GOSA_00023575, GOSA_00023576, GOSA_00028697, GOSA_00029499
Amaranthaceae	Suaeda glauca	49	Sgl11399, Sgl32818, Sgl32834, Sgl33416, Sgl34828, Sgl38100 ... Sgl38783, Sgl40223, Sgl51712, Sgl54377, Sgl55075, Sgl55076, Sgl55077, Sgl55079, Sgl55080, Sgl55081, Sgl55082, Sgl55083, Sgl55084, Sgl55086, Sgl55087, Sgl55089, Sgl55090, Sgl55523, Sgl55524, Sgl55686, Sgl57019, Sgl59710, Sgl60338, Sgl60339, Sgl60340, Sgl60341, Sgl60342, Sgl60343, Sgl60344, Sgl60345, Sgl60346, Sgl60348, Sgl60349, Sgl60742, Sgl60743, Sgl60904, Sgl66399, Sgl67577, Sgl67578, Sgl70734, Sgl78113, Sgl83352, Sgl83353
Amaranthaceae	Chenopodium album	32	gene:ENSEOMG00000000758, gene:ENSEOMG00000001005 ... gene:ENSEOMG00000002267, gene:ENSEOMG00000002583, gene:ENSEOMG00000004385, gene:ENSEOMG00000005503, gene:ENSEOMG00000005512, gene:ENSEOMG00000005930, gene:ENSEOMG00000006386, gene:ENSEOMG00000014263, gene:ENSEOMG00000015717, gene:ENSEOMG00000018084, gene:ENSEOMG00000019062, gene:ENSEOMG00000019367, gene:ENSEOMG00000020983, gene:ENSEOMG00000021590, gene:ENSEOMG00000023799, gene:ENSEOMG00000024373, gene:ENSEOMG00000024440, gene:ENSEOMG00000024603, gene:ENSEOMG00000024859, gene:ENSEOMG00000025030, gene:ENSEOMG00000025707, gene:ENSEOMG00000025789, gene:ENSEOMG00000030784, gene:ENSEOMG00000037334, gene:ENSEOMG00000039532, gene:ENSEOMG00000040328, gene:ENSEOMG00000050064, gene:ENSEOMG00000050407, gene:ENSEOMG00000050808, gene:ENSEOMG00000051436
Amaranthaceae	Chenopodium quinoa	71	CQ.Regalona.r1.1AG0019710, CQ.Regalona.r1.2AG0005850 ... CQ.Regalona.r1.2BG0008030, CQ.Regalona.r1.3AG0014530, CQ.Regalona.r1.5AG0010050, CQ.Regalona.r1.5AG0023770, CQ.Regalona.r1.5AG0023790, CQ.Regalona.r1.5AG0024110, CQ.Regalona.r1.5AG0024130, CQ.Regalona.r1.5AG0024150, CQ.Regalona.r1.5AG0024160, CQ.Regalona.r1.5AG0024180, CQ.Regalona.r1.5AG0024190, CQ.Regalona.r1.5AG0024210, CQ.Regalona.r1.5AG0024220, CQ.Regalona.r1.5AG0024230, CQ.Regalona.r1.5AG0024260, CQ.Regalona.r1.5AG0024270, CQ.Regalona.r1.5AG0024280, CQ.Regalona.r1.5AG0024290, CQ.Regalona.r1.5AG0024300, CQ.Regalona.r1.5AG0024310, CQ.Regalona.r1.5AG0024320, CQ.Regalona.r1.5AG0024330, CQ.Regalona.r1.5AG0024350, CQ.Regalona.r1.5BG0010560, CQ.Regalona.r1.5BG0025270, CQ.Regalona.r1.5BG0025280, CQ.Regalona.r1.5BG0025540, CQ.Regalona.r1.5BG0025550, CQ.Regalona.r1.5BG0025570, CQ.Regalona.r1.5BG0025580, CQ.Regalona.r1.5BG0025600, CQ.Regalona.r1.5BG0025610, CQ.Regalona.r1.5BG0025620, CQ.Regalona.r1.5BG0025630, CQ.Regalona.r1.5BG0025640, CQ.Regalona.r1.5BG0025650, CQ.Regalona.r1.5BG0025660, CQ.Regalona.r1.5BG0025670, CQ.Regalona.r1.5BG0025680, CQ.Regalona.r1.5BG0025690, CQ.Regalona.r1.5BG0025740, CQ.Regalona.r1.5BG0025750, CQ.Regalona.r1.5BG0025760, CQ.Regalona.r1.5BG0025770, CQ.Regalona.r1.5BG0025800, CQ.Regalona.r1.5BG0025810, CQ.Regalona.r1.5BG0025820, CQ.Regalona.r1.6AG0004270, CQ.Regalona.r1.6AG0007930, CQ.Regalona.r1.6AG0013850, CQ.Regalona.r1.6AG0013880, CQ.Regalona.r1.6AG0013890, CQ.Regalona.r1.6AG0020710, CQ.Regalona.r1.6AG0020720, CQ.Regalona.r1.6AG0020730, CQ.Regalona.r1.6BG0004310, CQ.Regalona.r1.6BG0014560, CQ.Regalona.r1.6BG0014650, CQ.Regalona.r1.6BG0014660, CQ.Regalona.r1.6BG0021790, CQ.Regalona.r1.6BG0021800, CQ.Regalona.r1.7AG0017800, CQ.Regalona.r1.7AG0017820, CQ.Regalona.r1.7BG0002340, CQ.Regalona.r1.7BG0002350, CQ.Regalona.r1.7BG0002360, CQ.Regalona.r1.9AG0022300, CQ.Regalona.r1.9AG0022310, CQ.Regalona.r1.9AG0022320
Anacardiaceae	Pistacia vera	28	pistato.v30035490, pistato.v30071410, pistato.v30079370 ... pistato.v30079440, pistato.v30079560, pistato.v30079600, pistato.v30079610, pistato.v30079620, pistato.v30079630, pistato.v30079640, pistato.v30079650, pistato.v30079710, pistato.v30079720, pistato.v30172160, pistato.v30172170, pistato.v30172220, pistato.v30172280, pistato.v30174770, pistato.v30211780, pistato.v30211790, pistato.v30211800, pistato.v30211820, pistato.v30211830, pistato.v30277630, pistato.v30291850, pistato.v30291860, pistato.v30295650, pistato.v30295670
Apiaceae	Apium graveolens	1	Ag6G02393
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.221.V1.1, AsparagusV1_04.224.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G22660
Brassicaceae	Arabidopsis thaliana	18	AT1G44080.1, AT1G57906.1, AT1G64840.1, AT1G65740.1 ... AT1G65760.1, AT1G65770.1, AT2G16290.1, AT2G16300.1, AT2G17030.1, AT2G17036.1, AT2G17690.1, AT2G24250.1, AT2G24255.1, AT2G26160.1, AT3G25750.1, AT4G35733.1, AT5G24040.1, AT5G60060.1
Brassicaceae	Eutrema salsugineum	21	Thhalv10000166m.g.v1.0, Thhalv10000175m.g.v1.0 ... Thhalv10000192m.g.v1.0, Thhalv10000198m.g.v1.0, Thhalv10000199m.g.v1.0, Thhalv10000460m.g.v1.0, Thhalv10000476m.g.v1.0, Thhalv10000488m.g.v1.0, Thhalv10000613m.g.v1.0, Thhalv10000675m.g.v1.0, Thhalv10005528m.g.v1.0, Thhalv10013786m.g.v1.0, Thhalv10019678m.g.v1.0, Thhalv10022699m.g.v1.0, Thhalv10022716m.g.v1.0, Thhalv10022973m.g.v1.0, Thhalv10023034m.g.v1.0, Thhalv10023062m.g.v1.0, Thhalv10023087m.g.v1.0, Thhalv10023184m.g.v1.0, Thhalv10027241m.g.v1.0
Brassicaceae	Schrenkiella parvula	13	Sp2g07810.v2.2, Sp2g23270.v2.2, Sp3g29510.v2.2 ... Sp3g29520.v2.2, Sp3g29540.v2.2, Sp3g30320.v2.2, Sp3g31050.v2.2, Sp3g31070.v2.2, Sp4g03220.v2.2, Sp4g03230.v2.2, Sp4g03240.v2.2, Sp4g03710.v2.2, Sp6g21720.v2.2
Brassicaceae	Brassica nigra	22	BniB01g018590.2N, BniB01g018600.2N, BniB01g018690.2N ... BniB01g019440.2N, BniB01g019470.2N, BniB01g019480.2N, BniB01g019490.2N, BniB02g013170.2N, BniB02g022810.2N, BniB02g076990.2N, BniB03g010260.2N, BniB03g013350.2N, BniB04g011550.2N, BniB04g026690.2N, BniB04g026700.2N, BniB04g026710.2N, BniB07g037370.2N, BniB07g040360.2N, BniB07g040380.2N, BniB08g011990.2N, BniB08g032950.2N, BniB08g036350.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G1360, Ceq01G1363, Ceq01G1726, Ceq01G1727, Ceq04G2253 ... Ceq06G0091, Ceq07G1781
Casuarinaceae	Casuarina glauca	17	Cgl01G0667, Cgl01G0668, Cgl01G0669, Cgl01G0670, Cgl01G0671 ... Cgl01G0672, Cgl01G0673, Cgl01G0740, Cgl01G0741, Cgl01G0742, Cgl01G1523, Cgl01G1883, Cgl03G0261, Cgl06G0269, Cgl06G0270, Cgl06G0272, Cgl07G1928
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10366, nbisL1-mrna-3092, nbisL1-mrna-9053
Nitrariaceae	Nitraria sibirica	23	evm.TU.LG03.1941, evm.TU.LG05.1134, evm.TU.LG05.1142 ... evm.TU.LG05.1145, evm.TU.LG05.1981, evm.TU.LG08.1003, evm.TU.LG08.1006, evm.TU.LG08.1009, evm.TU.LG08.1011, evm.TU.LG08.1012, evm.TU.LG08.1014, evm.TU.LG08.363, evm.TU.LG08.947, evm.TU.LG08.949, evm.TU.LG08.956, evm.TU.LG08.965, evm.TU.LG08.988, evm.TU.LG08.990, evm.TU.LG08.994, evm.TU.LG08.996, evm.TU.LG08.999, evm.TU.LG12.1242, evm.TU.LG12.1244
Plantaginaceae	Plantago ovata	19	Pov_00001734, Pov_00001971, Pov_00001972, Pov_00002114 ... Pov_00002115, Pov_00002153, Pov_00002260, Pov_00002262, Pov_00002263, Pov_00002264, Pov_00002890, Pov_00003420, Pov_00012503, Pov_00028579, Pov_00029578, Pov_00035101, Pov_00035102, Pov_00035103, Pov_00035104
Plumbaginaceae	Limonium bicolor	6	Lb3G20183, Lb4G23883, Lb4G26259, Lb8G36207, Lb8G36238 ... Lb8G36383
Poaceae	Echinochloa crus-galli	3	AH01.2496, BH01.2834, CH01.3037
Portulacaceae	Portulaca oleracea	30	evm.TU.LG01.2387, evm.TU.LG01.2388, evm.TU.LG01.2390 ... evm.TU.LG01.2391, evm.TU.LG01.2392, evm.TU.LG01.2393, evm.TU.LG01.2394, evm.TU.LG01.2395, evm.TU.LG01.2396, evm.TU.LG01.2397, evm.TU.LG01.2398, evm.TU.LG01.2399, evm.TU.LG02.1771, evm.TU.LG02.1777, evm.TU.LG05.1164, evm.TU.LG09.157, evm.TU.LG09.163, evm.TU.LG14.1557, evm.TU.LG14.1558, evm.TU.LG14.1560, evm.TU.LG14.1561, evm.TU.LG14.1562, evm.TU.LG14.1563, evm.TU.LG14.1564, evm.TU.LG14.1565, evm.TU.LG14.1566, evm.TU.LG15.303, evm.TU.LG18.262, evm.TU.LG25.198, evm.TU.LG26.801
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_2_RagTag.1922, evm.TU.Scaffold_2_RagTag.1923 ... evm.TU.Scaffold_2_RagTag.1924, evm.TU.Scaffold_2_RagTag.1925, evm.TU.Scaffold_2_RagTag.54, evm.TU.Scaffold_3_RagTag.50, evm.TU.Scaffold_3_RagTag.51, evm.TU.Scaffold_6_RagTag.2165
Rhizophoraceae	Carallia pectinifolia	17	nbisL1-mrna-101, nbisL1-mrna-102, nbisL1-mrna-16968 ... nbisL1-mrna-16969, nbisL1-mrna-186, nbisL1-mrna-187, nbisL1-mrna-188, nbisL1-mrna-20647, nbisL1-mrna-3331, nbisL1-mrna-3335, nbisL1-mrna-3336, nbisL1-mrna-3337, nbisL1-mrna-3338, nbisL1-mrna-3339, nbisL1-mrna-4326, nbisL1-mrna-5151, nbisL1-mrna-7545
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10974, nbisL1-mrna-11956, nbisL1-mrna-13391 ... nbisL1-mrna-15341, nbisL1-mrna-2987
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11665, nbisL1-mrna-21651, nbisL1-mrna-5855 ... nbisL1-mrna-5856
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000009l.52, add.evm.TU.utg000011l.547 ... add.evm.TU.utg000011l.548, add.evm.TU.utg000019l.496, evm.TU.utg000009l.1205
Rhizophoraceae	Kandelia obovata	4	Maker00005153, Maker00006794, Maker00007083, Maker00008170
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-14100, nbisL1-mrna-19398, nbisL1-mrna-21947 ... nbisL1-mrna-21948, nbisL1-mrna-22806, nbisL1-mrna-23066, nbisL1-mrna-23067
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-16264, nbisL1-mrna-16265, nbisL1-mrna-17190 ... nbisL1-mrna-24115, nbisL1-mrna-2473, nbisL1-mrna-2949
Salicaceae	Populus euphratica	7	populus_peu01762, populus_peu08656, populus_peu14054 ... populus_peu14055, populus_peu14056, populus_peu14057, populus_peu36698
Solanaceae	Lycium barbarum	8	gene-LOC132599367, gene-LOC132617772, gene-LOC132621142 ... gene-LOC132622906, gene-LOC132623017, gene-LOC132623732, gene-LOC132623773, gene-LOC132624637
Solanaceae	Solanum chilense	4	SOLCI001427800, SOLCI001590500, SOLCI003093000 ... SOLCI003093200
Solanaceae	Solanum pennellii	5	gene-LOC107003500, gene-LOC107005864, gene-LOC107009298 ... gene-LOC107009515, gene-LOC107010127
Tamaricaceae	Reaumuria soongarica	6	MSTRG.1499_chr01_+, MSTRG.4631_chr03_-, STRG.11736_chr02_- ... STRG.20749_chr08_-, STRG.25150_chr10_+, STRG.3837_chr02_+
Tamaricaceae	Tamarix chinensis	4	TC02G1332, TC02G1338, TC10G0191, TC11G0771